My recommendation is to stop all of the following activities:
using a version of armory older than 0.91
exporting keys
spending or receiving bitcoins before syncing your wallet
spending or receiving bitcoins before testing your paper backup
Do the following:
Uninstall all older versions of armory. This will not touch any of your wallets. Wallets live in their own directory separate from the Armory installation. It is safe to uninstall Armory.
Install 0.93.2 on both your online and offline computer.
Sync the online instance of Armory.
Restore your offline wallet from the paper backup if necessary.
Take a look at these Armory tutorials
https://bitcoinarmory.com/tutorials/If you run into any problems check out the trouble shooting page
https://bitcoinarmory.com/troubleshooting/Create a new offline wallet following the tutorials under offline wallets
After you've created a new offline wallet and tested it and feel confident in it's security, move all of your bitcoins to the new wallet.
The last step is important, after all the things you tried to so far it's quite possible that you have exposed some of your private key data to the internet.
Even if you think you didn't, it's still a good thing to practice. Your private keys may at some point be compromised, and it's best if you've already practiced moving all of your bitcoins to a new secure offline wallet.
Regarding exporting keys... You didn't see all of your bitcoins because you didn't export all of you keys. New keys are generated every time you send or receive bitcoins. Also exporting keys exposes them to the internet seriously compromising your data security.
From some of you other comments and questions you seem to be unaware of how deterministic bitcoin wallets work. There is quite a bit written about them on the internet so I encourage you to google it. To summarize deterministic wallets, you only need to backup the root key. If you restore the root key it will always generate the same list of private keys to infinity. If you load a watching only wallet based on that root key, it will always generate the same corresponding addresses to those keys to infinity. It's that aspect of deterministic wallets that allows you to only have to back up a wallet once when it is created.
If you export keys from an offline computer you probably won't get all of them, and it compromises your private keys. So don't do that. That feature is only there for very specific use cases. For example if you have a vanity address that you want to keep, you might want to import it and export it to your various wallets. Inability to load and scan the block chain in a timely manner is *not* a good use case for exporting private keys.