You can now encrypt without fear of losing BTCs.
Second, if you create a new address in your encrypted wallet (which, for technical reasons, also happens every time you send bitcoins), this new address will not be present in your backup wallet. Normally it would be, as the wallet generates 100 addresses in advance for exactly this reason (you can create up to 100 new addresses and they'll all be present in your backup, so you don't have to worry if your backup is a little bit out of date), but encrypting your wallet deletes these unused addresses and creates 100 new ones, to minimise the amount of money you stand to lose if a previous unencrypted backup gets stolen (ideally, it would delete all your address and replace them with new ones, but it can't delete the ones you're already using, because, well, you're using them). If you send bitcoins using your encrypted wallet, or create new addresses in your encrypted wallet, your unencrypted backup will not be able to recover all your bitcoins.
You have been warned.
Thanks for this.