When you download block that can be connected to the top of your chain, the Bitcoin client checks if some orphan block "fits" to the top of the chain. Then the orphan block is processed (consuming CPU resources) and appended to you block chain copy.
Check the piece of my debug log:
15:43:00 block pointing to previous block "2aaa53..." was downloaded, but I don't have this block, so I don't know what consecutive number the block should have. So, it is orphan block nr. 16 now.
15:43:28 last orphan block was downloaded
15:44:20 "2aaa53..." block was properly downloaded and the orphan block nr. 16 is consumed from the memory.
15:56:04 almost all 504 orphan blocks were consumed (appended to the top of block chain)
15:56:08 another line of orphan block is being downloaded.
BTW. It looks that from version 0.9.3 is number of orphan blocks in memory limited to 751 blocks.
2014-10-28 15:42:59 UpdateTip: new best=000000000000000010305db8a34360bf1c8ba3a4b70e2d2ee3baa8f51a76111c height=309668 log2_work=79.596869 tx=42100519 date=2014-07-07 20:54:56 progress=0.655304
2014-10-28 15:42:59 ProcessBlock: ACCEPTED
2014-10-28 15:43:00 ProcessBlock: ORPHAN BLOCK 15, prev=00000000000000001a54bfaed695430eec2aa6bcabceae526b609ac6fe0d6bed
2014-10-28 15:43:00 ProcessBlock: ORPHAN BLOCK 16, prev=00000000000000002aaa53aef033969d68cc70405a7906cef9dd842944bb8d6d
2014-10-28 15:43:00 ProcessBlock: ORPHAN BLOCK 17, prev=00000000000000000d4d6d2d74b180bdba480eb1e711d9a2dea149b4122f177c
2014-10-28 15:43:00 ProcessBlock: ORPHAN BLOCK 18, prev=00000000000000000859685a6b93e5b0e740ac6be3d842063e4dd861e1f9f9db
<516 LINES INTENTIONALLY DELETED>
2014-10-28 15:43:28 ProcessBlock: ORPHAN BLOCK 502, prev=0000000000000000097a74b21052bfda6f6a45be233c7f2ca3e6c37846c5b298
2014-10-28 15:43:28 ProcessBlock: ORPHAN BLOCK 503, prev=000000000000000041518eea5d76f9ea54e57a5bba1cd1445cfe82b58a12a10c
2014-10-28 15:43:28 ProcessBlock: ORPHAN BLOCK 504, prev=00000000000000003252284a5ee503fe2c7a3d4ded8be64d6ebba13cd2df6199
2014-10-28 15:43:39 Pre-allocating up to position 0x1100000 in rev00154.dat
2014-10-28 15:43:41 UpdateTip: new best=00000000000000001599ef1d3fe2eb7b875c2a3f9ecb2975e6e1d53a750f8252 height=309675 log2_work=79.597667 tx=42102453 date=2014-07-07 21:29:57 progress=0.655385
2014-10-28 15:43:41 ProcessBlock: ACCEPTED
2014-10-28 15:43:43 receive version message: /bitcoinseeder:0.01/: version 60000, blocks=230000, us=147.32.163.22:8333, them=0.0.0.0:0, peer=172.245.62.102:39692
2014-10-28 15:43:54 receive version message: /bitcoinseeder:0.01/: version 60000, blocks=230000, us=147.32.163.22:8333, them=0.0.0.0:0, peer=178.18.90.41:52828
2014-10-28 15:43:58 receive version message: /bitcoinseeder:0.01/: version 60000, blocks=230000, us=147.32.163.22:8333, them=0.0.0.0:0, peer=199.127.225.195:60942
2014-10-28 15:44:16 UpdateTip: new best=0000000000000000359900b3a4005fbe1a3be35582917a3459a772d8320ac5e2 height=309676 log2_work=79.597781 tx=42104029 date=2014-07-07 22:01:04 progress=0.655456
2014-10-28 15:44:16 ProcessBlock: ACCEPTED
2014-10-28 15:44:17 UpdateTip: new best=00000000000000001a54bfaed695430eec2aa6bcabceae526b609ac6fe0d6bed height=309677 log2_work=79.597895 tx=42104104 date=2014-07-07 22:00:10 progress=0.655456
2014-10-28 15:44:17 Leaving block file 154: CBlockFileInfo(blocks=619, size=133861902, heights=309059...309677, time=2014-07-03...2014-07-07)
2014-10-28 15:44:17 Pre-allocating up to position 0x1000000 in blk00155.dat
2014-10-28 15:44:20 Pre-allocating up to position 0x100000 in rev00155.dat
2014-10-28 15:44:20 UpdateTip: new best=00000000000000002aaa53aef033969d68cc70405a7906cef9dd842944bb8d6d height=309678 log2_work=79.598009 tx=42105346 date=2014-07-07 22:29:32 progress=0.655518
2014-10-28 15:44:23 UpdateTip: new best=00000000000000000d4d6d2d74b180bdba480eb1e711d9a2dea149b4122f177c height=309679 log2_work=79.598123 tx=42105738 date=2014-07-07 22:34:16 progress=0.655532
2014-10-28 15:44:24 UpdateTip: new best=00000000000000000859685a6b93e5b0e740ac6be3d842063e4dd861e1f9f9db height=309680 log2_work=79.598237 tx=42106198 date=2014-07-07 22:40:03 progress=0.655548
2014-10-28 15:44:26 UpdateTip: new best=000000000000000037b028a7d1214852e2701a153ab3364765e087795bace9d4 height=309681 log2_work=79.59835 tx=42106791 date=2014-07-07 22:50:46 progress=0.655573
2014-10-28 15:44:26 UpdateTip: new best=0000000000000000291140c22622d3bf88469fde1d97f3ee9ca1c77157e0ab88 height=309682 log2_work=79.598464 tx=42106842 date=2014-07-07 22:54:51 progress=0.655580
2014-10-28 15:44:29 UpdateTip: new best=000000000000000009175843bda6c59f7b72f683b0c4747a4f414881a1c9466f height=309683 log2_work=79.598578 tx=42107652 date=2014-07-07 23:09:05 progress=0.655614
<535 LINES INTENTIONALLY DELETED>
2014-10-28 15:56:01 UpdateTip: new best=000000000000000041518eea5d76f9ea54e57a5bba1cd1445cfe82b58a12a10c height=310165 log2_work=79.65244 tx=42316553 date=2014-07-11 01:46:53 progress=0.665481
2014-10-28 15:56:03 UpdateTip: new best=00000000000000003252284a5ee503fe2c7a3d4ded8be64d6ebba13cd2df6199 height=310166 log2_work=79.65255 tx=42317117 date=2014-07-11 02:02:11 progress=0.665512
2014-10-28 15:56:04 UpdateTip: new best=0000000000000000073d29de427832df5fd440251c5b91a39d9cc0fd6da8203f height=310167 log2_work=79.65266 tx=42317207 date=2014-07-11 02:03:51 progress=0.665516
2014-10-28 15:56:04 ProcessBlock: ACCEPTED
2014-10-28 15:56:05 Peer 50.170.60.31:8333 is stalling block download, disconnecting
2014-10-28 15:56:08 ProcessBlock: ORPHAN BLOCK 15, prev=0000000000000000103d879cc863d881ac97b1a0351e47a1611565272f74f60f
2014-10-28 15:56:08 ProcessBlock: ORPHAN BLOCK 16, prev=000000000000000011eb4744c76822d8b01db3a0041316b59fb988cc85d2a9f4
2014-10-28 15:56:08 UpdateTip: new best=000000000000000000ebfad7343754ae4d4ea19178de72529df5e167adfbded0 height=310168 log2_work=79.652769 tx=42317240 date=2014-07-11 02:04:38 progress=0.665517
2014-10-28 15:56:08 ProcessBlock: ACCEPTED
2014-10-28 15:56:11 Pre-allocating up to position 0x1100000 in rev00155.dat
2014-10-28 15:56:11 UpdateTip: new best=00000000000000002860ae698960e908573190f0ca1fb76637f3ae7103e4c06c height=310169 log2_work=79.652879 tx=42317884 date=2014-07-11 02:25:19 progress=0.665557
2014-10-28 15:56:11 ProcessBlock: ACCEPTED