I have the same issue with standard size pcie riser cables. It sucks bc I cannot fit the 3rd card without them... even when I have 2 cards and put the secondary card on a riser everything boots up, and as soon as cgminer starts I get BSOD.
my next step is to get a riser with a molex cable
I figured out why it was not working. the 3 large pcie slots are 16x, 8x and 4x. i was using 16x cables and also one of the cables may be faulty as well.
So I took 1 16x cable and cut the cable down to a 4x and now i have 3 cards. 2 in slots and one on a riser cable (I seem to have lost my 3rd cable with all the junk i threw out last week). I tried to use the 2nd cable I had and cut it into an 8x but the system was not even seeing my card in the 2nd slot so I'm pretty sure that cable is dead.
Anyway I will buy a few more cables and see if I can get the other 2 cards to work on risers b/c card one has no room for air circulation. Apparently on this mobo the pcie 16x slot gets down graded to a 8x when there is a card in the 8x, but it does have 3 1x pcie so perhaps I will get those instead.
For 1x risers do those require a molex cable? I think I have only one power power outlet left on my psu
16x cables should work even if the lane speed is only 8x or 4x. The card is always 16x, but sometimes it just doesn't work at full speed, or bandwidth I guess I should say. It shouldn't be necessary to cut them down, in other words.
Buying 16x cables when you know it only works at 1x/4x/8x speed is kind of a waste though. That's why I bought 4 8x cables because all 4 of my cards run at 8x.
1x risers don't require a molex cable any more than a 16x cable would. The first "tooth" of the card slot is for power, everything else is just data. If you run more than 4 cards I'd add a powered riser for every card more than three, unless your mobo has a sata power plug specifically for powering the pci-e bus.
I have a feeling you are in the same boat as I, specifically the cables work but they add too much latency or something. I can tell that Windows is trying to load the cards that never show in device manager, probably hitting some sort of timeout while booting or something. I'd occasionally be able to detect one or two cards on risers, but they still weren't operating properly judging by scrolling in Firefox and other simple windows tasks.
If you haven't already tried, wrap your cables in some aluminum tape to try and shield them from electrical interference. Be careful though, the stuff is conductive. It didn't work for me, so good luck either way!