While it is true that the word "bot" can mean any program from first-person-shooter games AI opponents to harmless IRC bots, these are not used in the context of botnets(1) and thus irrelevant to our discussion(2).
Unless you want to try a valid argument for a change, I'm done here.
EDIT::a few links worth following:
http://www.honeynet.org/papers/bots/
http://www.abuse.ch/?p=3294
http://arstechnica.com/business/news/2012/03/p2p-botnets-the-bigger-they-come-the-faster-they-fall.ars
Notes:
(1) you can safely assume your Counterstrike bots won't take over your gaming machine
![Tongue](https://bitcointalk.org/Smileys/default/tongue.gif)
(2) effectively outside of the scope
since you're pulling wikipedia quotes i'll pull part of the same quote:
i agree that most are probably malicious
i disagree that 100% of them are 'inherently' malicious
![Tongue](https://bitcointalk.org/Smileys/default/tongue.gif)