My current plan is to put a Molex MicroFit 3mm 6 pin header on board supplying 3.3V, 5V, 12V. I thought about a Sata 15pin but they're hard to find and also users might screw up by attaching one with only 5V+12V. Seems to be common to leave off the 3.3V. so bad idea. But these are small and quite robust.
Then use a Fairchild FAN2108 to drop 12V to 1.2V. The specs indicate close to 90-95% efficiency for mid-high loads which is much better than the AOZ1025 under full load. It needs 5V for bias voltage so running off a 12V adapter isn't ideal. But everyone has a ATX PSU around anyway as they've been mining w/GPUs til now
This all allows me to bring the board size down to minimum which saves a lot of money.
On the board the 3.3V and 1.2V are on the bottom and come in from one side where PSU is located. The GND is poured over remainder and interlocks with thick traces into 1.2V grid. Then the top layer has just a small number of signals from edge of FPGA to connectors, less than 1cm. Vias and traces just barely doable with low-cost board fab. This is all highly unusual for FPGA board but remember here we only a few small low freq signals near the board edge.
Ultra minimal design. I've already drawn on paper but need to get into computer.
Each board has a 6 pin right angle header bottom center edge, and 6 pin right receptacles at other 3 sides center edge. So boards can sit next to each other and 3 neighbors connect to each master. They continue as such relaying 4 lines for each. No long signal paths, only 1-2 cm, for a variant of SPI between boards. Each board has a simple control register and 4 way multiplexer. Control byte sets whether talking to this board or bypassing to 1 of 3 neighbors, or local data, temperature and CLKGEN sampling.
Large heatsink on board but no fan as they will be too close and just pollute each other. Large fans above force air thru and out all units. LCN75 sensor under each FPGA allows monitoring temperature.
The one master-master unit will connect by short cable to GPIO on my Core2Duo mini-itx board. Later I hope this will connect to a R-Pi instead as that's cheaper, smaller and way cool. Hopefully will write new kernel for cgminer and run that on R-Pi but unsure about that for now.