China has also been following this trend. They've been cracking down on Christians in recent years. This cause some split there, making it necessary for Christians loyal to the See to worship in underground churches rather than the "official" registered churches.
I don't condemn what the Chinese authorities do. Christianity and Islam are two religions, which actively attempt to influence the government and the politics. Look at Philippines and South Korea. Both these nations are essentially run by the evangelical / catholic church.
I wouldn't really say it's being run by the Catholic Church. Even when they do endorse politicians (which they rarely do) people usually don't listen. That's we say here that there is no Catholic vote here. (Christian spino-offs like INC, El Shaddai, etch are a different matter though). I may even dare say that the hold of the Church here is weaker than ever. I'm a secularist but I do not agree with gov't meddling with religious affairs unless it's for really important security reasons. For example, even Singapore closed down a mosque once because it was being used as recruitment site for terrorists. (The shut down was after they arrested people who tried to bomb Changgi airport.)
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Not run but the sphere of influence of the Catholic Church specially in the Philippines is evident. Remember the People Power that topple the dictatorship of Ferdinand Marcos? It was the Head of the Catholic Church that call for the people to march in the street in protest. Currently, the Church was against the killings of "innocent" addicts by the government of the Philippines. But Duterte is not giving in to them, on the contrary, he is anti-Church because he believes that the Catholic Church has abuses or abuse its authority and he is also a victim on this.
I think with the case of Marcos the people are fed up anyway. The only reason it required Church intervention to start the revolution was that the Church was the only unifying force available back then (we still don't have sms or social media).
As for the current spat between Church and Duterte, I've never really heard priests claiming that those druggies and peddlers were innocent. Rather they were pointing out that people deserve the chance to CHANGE and that innocent people are also dying as collateral damage (mistaken identity, children dying during police operations or vigilante killings, etc).
As for Duterte, I didn't vote for him and ambivalent towards him. I'm OK with his stance on some issues but I do not like the implementation of some. The way he's treating the Church strike me as nothing but rude. You can criticize others without calling them names.