OK, as long as you actually PRINT your paper wallets and are using secure printing procedures you're fine. Paper wallets are a very powerful tool.
Your Master Private Key will never be found out if you do one thing:
1. Don't ever export a single private key from your Electrum wallet.
It's not hard to be safe with Electrum. Just don't export private keys, and don't let your seed online.
Paper Wallets are better for individual key management, physical security, and long term storage.
Electrum is better for frequent re-use. Aka, I have a cold wallet, but I want to use it to top up my hot wallet occasionally, etc.
Stay calm, and learn about each method, and how to use it safely. If you are paranoid and scared about everything you hear, you will get nervous and make a big mistake that loses all your bitcoins. So stay calm, learn about your options, and remember to BACK UP EVERYTHING. If it doesn't exist in two or more physical locations, one fire in your house can wipe out all your bitcoin holdings.