Put your religious intolerance and hatred aside for a moment and examine this situation critically. I really doubt all churches and religious groups persecute gays, so this is not a fair generalization. Furthermore just because these people have opposing viewpoints about homosexuality, and you find them offensive, does NOT mean it is an attack. The price of your freedom of speech is that occasionally some one will say something that offends you. Offense is NOT equivalent to an attack. Learn the difference.
If you have however spotted groups that do persecute gays, why not go after THOSE SPECIFIC GROUPS? Why is it necessary to attack the funding for all religious organizations? A lot of these groups run actual substantive charities that help lots of people in demonstrable ways. How many gay activist groups can say the same? Do you think their numbers come even close?
These groups are now going way beyond their stated charter of equality and are moving into their own flavor of intolerance and supremacy, and people are realizing this. This is about destroying the foundations of society in preparation for the arrival of our socialist overlords, not about equality. Read Marxist strategy, the destruction of religion is one of their stated goals.