Hm, now that I think of it, "not supported by cgminer" might be another one...
Can you name some more cons? I'd very happily listen to that. Everyone learns from their mistakes, and the JTAG-based protocol definitely was one.
Some of the cons that I listed for the other boards were present on the x6500 rev. 2 as well, but have been fixed in rev. 3.
I'd really appreciate it if some more experts on this area (whether affiliated with one of the board vendors or not) could chime in and make a better (and neutral) comparison chart. This whould probably be taken to some wiki (http://wiki.btcfpga.com/?) though.