Would it be an acceptable temporary solution to connect only to the servers run by the Electrum development team until the malicious servers are identified and blocked? Does Electrum have official servers online?
From what I understand, all you have to do is ignore that stupid message to download a "newer" Electrum. Electrum should not be showing server MOTDs anyway, that is a design flaw imo. And if you are connected to a malicious server sending such messages, change it in Network settings.
In Linux we usually don't go to web pages to download software, but use packages from official repositories (which in turn most distros has them crypto signed etc). And also, the phishers are lazy and don't always provide linux binaries of their trojan versions...
If you feel unsafe using the Electrum light wallet, the "right" thing to do is download Bitcoin core wallet, use the option
prune=550 to save space, and the other
tips to save bandwidth.
The IP logging thing can easily be circumvented by using TOR.