If you guys could help me add to this list that would be great. We want to create an awesome algorithm monitoring hub to analyze the prominence of emerging hashing functions and their net hashrate dynamics. I'm trying to compile every coin that exists that isn't purely SHA256, Scrypt, Skein, Groestl, or Qubit. No PoS coins!
Updated List
Adaptive N: 10-5 Coin, Altcoin, CaiShen, Cataloniacoin, CherryCoin, EmuCoin, ExeCoin, Euphorian, GPU-Coin, H2OCoin, GenesisCoin, Kimocoin, MinerTokens, PerfectCoint, Rhinohorn, RotoCoin, ThePandaCoin(PANDA), SpainCoin, SiliconValleyCoin, Vertcoin, WolongCoin
Scrypt-Jane: 13Coin, AppleCoin, Bitleu, Cachecoin, CopperBars, DestinyCoin, Fatecoin, FreeCoin, Graphene, GoldPressedLatinum, HeroCoin, InsertCoin, InstaPay, microCoin, NITCoin, OneCoin, Pennies, Pingas, QQCoin, RadioactiveCoin, ThorCoin, Tickets, Ultracoin, VendettaCoin, YacCoin, ZcCoin
Cunningham Chains: DataCoin, PrimeCoin, PNUT
X11: Darkcoin, ElectronicYen, HiroCoin, Muniti, StacyCoin
SHA-3/Keccak: 365Coin, CateDoge, CopperLark, CryptoMeth, DadCoin, eCoin, Galleon, HelixCoin, InkCoin, MaxCoin, NEM, Palcoin, Scrasic, Sifcoin, Slothcoin, UkraineCoin, WeCoin, Wolf
Blake: Blakecoin, Landcoin, Photon, StarTrek
Quark: Atom, BitQuark, C-Note, DIMEcoin, FairQuark, Frozen, InternationalCoin, Online-to-Offline, OxCoin, Metacoin, MiniCoin, Molecule, Particle, PopulaceCoin, Probe, Quark, Quarkbar, Randomquark, SecureCoin, Zurcoin
Momentum: Protoshares
HSH256: Mediterraneancoin
Scrypt-PGC: Pangu
Prime: RieCoin
Scrypt-HTC: HuitongbiCoin
Keccak/SHAvite/Fugue: Metiscoin
Fugue256: FugueCoin
SHA-1: SHA1Coin
Groestlx2: GroestlCoin
Proof of Friction: FrictionCoin
Proof of Transaction: FlutterCoin
Unclassified: AnimeCoin, ChainCoin, Heavycoin, HunterCoin
Please add to the list! I'll give each person 200 Myriad for each coin they can hunt down and add to the list. We want to include every coin, even the coin with just 1 miner on it (if it exists).