If you guys could help me add to this list that would be great. We want to create an awesome algorithm monitoring hub to analyze the prominence of emerging hashing functions and their net hashrate dynamics. I'm trying to compile every coin that exists that isn't purely SHA256, Scrypt, Skein, Groestl, or Qubit. No PoS coins!
Updated List
Adaptive N: Vertcoin, GenesisCoin, ExeCoin, SpainCoin, SiliconValleyCoin, Rotocoin, GPU-Coin, 10-5 Coin, H2OCoin, RotoCoin, CaiShen, Altcoin, EmuCoin, Rhinohorn, ThePandaCoin(PANDA), CherryCoin, WolongCoin, PerfectCoint, MinerTokens, Euphorian, Cataloniacoin
Scrypt-Jane: Ultracoin, microCoin, Pennies, CopperBars, AppleCoin, Cachecoin, Tickets, Graphene, Bitleu, Fatecoin, FreeCoin, GoldPressedLatinum, HeroCoin, OneCoin, Pingas, RadioactiveCoin, ThorCoin, VendettaCoin, ZcCoin, YacCoin, InsertCoin, NITCoin
Cunningham Chains: DataCoin, PrimeCoin
X11: Darkcoin, HiroCoin
SHA-3/Keccak: 365Coin, CryptoMeth, Galleon, InkCoin CateDoge, eCoin, Palcoin, HelixCoin, Scrasic, MaxCoin, Slothcoin, NEM, Wolf, CopperLark, Sifcoin, WeCoin, UkraineCoin
Blake: Landcoin, Blakecoin, Photon,
Quark: Quark, Quarkbar, AnimeCoin, DIMEcoin, InternationalCoin, Randomquark, PopulaceCoin, SIFCoin, SecureCoin, OxCoin, DiamondCoin, Online-to-Offline
HSH256: Mediterraneancoin
Scrypt-PGC: Pangu
Scrypt-HTC: HuitongbiCoin
Fugue256: FugueCoin, CrownCoin
Proof of Friction: FrictionCoin
SHA1: SHA1Coin
Groestl x2: GroestlCoin
Prime: RieCoin
Momentum: Protoshares, MemoryCoin (modified)
Unclassified: ChainCoin, HunterCoin, Heavycoin
Please add to the list! I'll give each person 200 Myriad for each coin they can hunt down and add to the list. We want to include every coin, even the coin with just 1 miner on it (if it exists).