Indeed if you use a different software it can steal your coins, so you can follow step one.
I would use a clean install computer (without any network) and zero fill the disk after the splits has been created. I would also add a password to the seeds (so even with enough seeds + with knowledge what it is a thief can't rebuild).
I would also not print it on a printer. I would use steal plates made for seed words.
What happens if your Bitcoin Seed Splitter tool is gone one day or not working? Someone could also create malicious app clone for stealing words.
Are there any alternatives we can use to restore our backup phrase and merge all splits or we are fully dependent only on your software.
This looks to me like one more single point of failure.