The Internet is anything but decentralized and it is no trouble whatsoever for the authorities to shut down centralized services. Nor is it required that there is a low threshold for collateral damage. Witness Megauploads as an example. In that case the service threatened mainly the dominant political player (the US) yet it was still possible to completely kill it and do so overnight.
In the case of Megaupload it was not a threat to the US government, it was a threat to certain US businesses that corrupted the US government to align it's national interest with their business interests. We voters did not vote to take down Megauploads to protect the business model of their competitor. You're right they were able to kill it and you're right Bitcoin will probably be attacked in some countries at some point.
But Bitcoin is not completely decentralized, nothing we know of can scale and be completely decentralized. The math isn't going to work. How can it work for Bitcoin? If we look at how Bitcoin is now it's not completely decentralized. We have mining pools and companies.
It would also be fairly trivial, I believe, for a great deal of grief to be heaped upon those end-users attempting to use Bitcoin natively, and do so at the ISP and even the backbone level. Do you really want to fire up a VPN to make a micro-transaction? ...even if it remains completely trivial to use you favorite VPN which is far from certain and, I believe, even unlikely...
Just use Bitcoin to purchase VPN service. What do you mean by fire up a VPN to make a micro transaction? What does it matter if we did have to run a VPN? Microtransactions are a thing that cryptocurrencies can do better than any other.
The internet will not go away absent a Mad-max scenario. It is to critical. But it would not be very hard to make it much less free. Something like Bitcoin has the potential to threaten pretty much all central governments (who are pretty universally cronies of the modern economic systems which have developed) so I think that counting on jurisdiction hoping is a risky gamble.
Bitcoin does not threaten all central governments. The NSA is not threatened at all by it.
I do see your point that you cannot count on jurisdiction and that is a gamble but isn't that the gamble we take right now already? It seems we are already taking that sort of gamble and a 51% attack has not occurred.
A low data-rate solution operated by low capitalized independent specialists is possible under almost any realistic regime of increased network control. And second-tier providers have a lot more flexibility to adapt to on-the-ground and evolving threats. This is why I see such a structure as having a realistic possibility of enduring in most possible future scenario. A solution where a set of highly capitalized entities operating Bitcoin natively is, to me, a very ginger solution which relies on the kindness of it's adversaries for survival.
edit: characterize specialists, end-users, and spelling.
The solution you see in your vision just does not seem possible to do and have it scale up to the levels Bitcoin has to scale up without changing Max Block Size. So unless Bitcoin is going to basically just settle for being unable to scale up it's going to have to make a concession. If it does not then Litecoin or some other coin probably will and will surpass Bitcoin because of it. Microtransactions are essential to the success of Bitcoin and cryptocurrencies in general.
How exactly would you do this and allow Bitcoin to both scale up and do microtransactions?
I have some possible solutions to prevent highly capitalized entities from operating Bitcoin natively but they all would require complex legal schemes to pull off such as cooperatives, syndicates, L3C's and benefit corps. It is possible in theory but in practice there is the concern that if done wrong it would become just another highly capitalized entity.