It's a shame really, I wish we have seen them in the finals, that would have made it a lot more fun to watch overall. Hopefully we will see a big game between Milan vs Inter at least.
Why are you comparing the number of points in the tournament and the Champions League, they are completely different things and certainly not an indication of which team is stronger. The difference in the tournament is 22 points, but who knows what would have happened if Milan hadn't lost 15 points then, because things could have been different. Besides, if you look at the stats, I can't say that Napoli were much stronger.