first I am the author of all those versions. metallicjames was rather a pre-release, and after that I decided to change the difficulty to 256, as it was allowing miners to get more shares. so apparently the other followed more the pre-release version that the "standard version".
also at that time, I was using verter, and this was the parameter which was giving good aggreement between the hashrate reported by the miner and the pool...
I can always change that setting for lyra2re (but technically it should have been 256)
OK, please post here once you'll release a new version with 128 diff for the original lyra (and possibly add the aforementioned aliases for lyra2 algos - similarly as badman74 did in his version for the original lyra2).